{"id":16657,"date":"2022-09-14T13:04:15","date_gmt":"2022-09-14T16:04:15","guid":{"rendered":"https:\/\/mindthegraph.com\/blog\/?p=16657"},"modified":"2023-03-17T14:47:26","modified_gmt":"2023-03-17T17:47:26","slug":"success-case-xtalkdb-a-database-of-signaling-pathway-crosstalk","status":"publish","type":"post","link":"https:\/\/mindthegraph.com\/blog\/et\/success-case-xtalkdb-a-database-of-signaling-pathway-crosstalk\/","title":{"rendered":"XTALKDB: signaaliradade ristsidumise andmebaas Paberi \u00fclevaade"},"content":{"rendered":"<p>See h\u00e4mmastav artikkel toob v\u00e4lja statistika, mis v\u00f5tab kokku XTALKDB andmed. M\u00f5ne minutiga l\u00f5i autor infograafika, mis selgitab liikide levikut XTALKDB-s.<\/p>\n\n\n\n<p>Kontrollige <a href=\"https:\/\/academic.oup.com\/nar\/article\/45\/D1\/D432\/2605725#google_vignette\" target=\"_blank\" rel=\"noreferrer noopener\">originaalartikkel siin<\/a>.<\/p>\n\n\n\n<p>Kuna inimesed on visuaalsed olendid, on pildid ikka veel parim viis oma uurimist\u00f6\u00f6 selgitamiseks nii paljude \u00fcksikasjadega, kui soovite.<\/p>\n\n\n\n<h2><strong>Teadlased on v\u00e4lja t\u00f6\u00f6tanud andmebaasi, mis dokumenteerib konkreetsete signaaliradade paaride ning liikide ja kudede vahelist ristm\u00f5ju, milles neid t\u00e4heldatakse.<\/strong><\/h2>\n\n\n\n<p>Bioloogiateaduskonna Sarah Sami juhitud uurimisr\u00fchm (2016) teatas, et v\u00e4lise signaali tajumine retseptorite poolt p\u00f5hjustab vahepealsete valkude aktiivsuse muutumise. <\/p>\n\n\n\n<p>Selle tulemuseks on transkriptsioonifaktorite regulatsioon, mis moduleerib sihtgeenide ekspressiooni. XTalkDB salvestab iga teepaari kohta \u00fcksikasjaliku teabe, mis kirjeldab eksperimentaalseid tingimusi, mille puhul ristm\u00f5ju avastati. <\/p>\n\n\n\n<p>Rakud hindavad oma keskkonda ja reageerivad sellele signaaliradade kaudu. Signaaltee sisaldab tavaliselt h\u00e4sti m\u00e4\u00e4ratletud regulatiivsete ja f\u00fc\u00fcsikaliste vastastikm\u00f5jude kogumit retseptorite, vahepealsete signaalivalkude, transkriptsioonifaktorite ja sihtgeenide vahel. <\/p>\n\n\n\n<p>XTalkDB veebisait pakub teadlastele h\u00f5lpsasti kasutatavat kasutajaliidest, et sirvida ristmolekulide teavet, tehes p\u00e4ringuid \u00fche v\u00f5i mitme huvipakkuva tee v\u00f5i molekuli kohta.<\/p>\n\n\n\n<p><strong>Uuringus osales 650 paari.<\/strong><\/p>\n\n\n\n<h2><strong>Graafiline kokkuv\u00f5te, mille aluseks on Mind the Graph<\/strong><\/h2>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><a href=\"https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/success-case-image.webp\"><img decoding=\"async\" loading=\"lazy\" width=\"718\" height=\"688\" src=\"https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/success-case-image.webp\" alt=\"success-case-XTALKDB-a-database-of-signaling-pathway-crosstalk\" class=\"wp-image-19775\" srcset=\"https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/success-case-image.webp 718w, https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/success-case-image-300x287.webp 300w, https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/success-case-image-13x12.webp 13w, https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/success-case-image-100x96.webp 100w\" sizes=\"(max-width: 718px) 100vw, 718px\" \/><\/a><figcaption class=\"wp-element-caption\"><em>Valmistatud koos <a href=\"https:\/\/mindthegraph.com\/app\/graphical-abstract-maker\" target=\"_blank\" rel=\"noreferrer noopener\">Mind the Graph<\/a><\/em><\/figcaption><\/figure><\/div>\n\n\n<p>Arutledes v\u00f5imalike paranduste \u00fcle: \"XTalkDB aluseks oleval k\u00e4sitsi kureerimisprotsessil on omad piirangud, eriti kui me p\u00fc\u00fcame laiendada andmebaasi ulatust. <\/p>\n\n\n\n<p>Me kavatseme v\u00e4lja t\u00f6\u00f6tada loomuliku keele t\u00f6\u00f6tlemise raamistiku, mis hindab v\u00e4ljaandeid selle alusel, kui t\u00f5en\u00e4oline on, et need dokumenteerivad ristkasutust. Seej\u00e4rel saab kuraator keskenduda k\u00f5rgelt reastatud v\u00e4ljaannetele,\" tunnistavad nad.<\/p>\n\n\n\n<h2><strong>Paberi m\u00f5ju ja tulemuslikkus<\/strong><\/h2>\n\n\n\n<p>Me saame anal\u00fc\u00fcsida koos <a href=\"https:\/\/mindthegraph.com\/blog\/altmetric\/\" target=\"_blank\" rel=\"noreferrer noopener\">Altmetric<\/a> andmed, et see paber on <strong>k\u00f5igi m\u00f5\u00f5dikute \u00fclemine osa k\u00f5igis NIHi rahastatud artiklites m\u00f5\u00f5tmete raames. <\/strong><\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><a href=\"https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/xtalkdb.png\"><img decoding=\"async\" loading=\"lazy\" width=\"327\" height=\"128\" src=\"https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/xtalkdb.png\" alt=\"\" class=\"wp-image-20279\" srcset=\"https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/xtalkdb.png 327w, https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/xtalkdb-300x117.png 300w, https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/xtalkdb-18x7.png 18w, https:\/\/mindthegraph.com\/blog\/wp-content\/uploads\/2022\/09\/xtalkdb-100x39.png 100w\" sizes=\"(max-width: 327px) 100vw, 327px\" \/><\/a><figcaption class=\"wp-element-caption\"><em>Allikas: <a href=\"https:\/\/badge.dimensions.ai\/details\/id\/pub.1052462103\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/badge.dimensions.ai\/details\/id\/pub.1052462103<\/a><\/em><\/figcaption><\/figure><\/div>\n\n\n<p>Kasutage infograafiate j\u00f5udu ka oma artikli edendamiseks. Proovige Mind the Graph!<\/p>\n\n\n\n<div style=\"height:28px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"is-layout-flex wp-block-buttons\">\n<div class=\"wp-block-button\"><a class=\"wp-block-button__link has-background wp-element-button\" href=\"https:\/\/mindthegraph.com\/app\/auth\/register?from_url=\/\" style=\"border-radius:100px;background-color:#dc1866\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Proovige Mind the Graph<\/strong><\/a><\/div>\n<\/div>\n\n\n\n<div style=\"height:46px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>","protected":false},"excerpt":{"rendered":"<p>\u00d5ppige koos nendega, kes on juba avastanud infograafiate j\u00f5u. Selles artiklis on Mind the Graph abil tehtud graafilised kokkuv\u00f5tted. <\/p>","protected":false},"author":29,"featured_media":20046,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":[],"categories":[195,958,957,960,1],"tags":[96,554,963],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v19.9 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>XTALKDB: a database of signaling pathway crosstalk Paper Review - Mind the Graph Blog<\/title>\n<meta name=\"description\" content=\"This amazing article brings out statistics summarizing data in XTALKDB with an infographic explaining the distribution of the species in XTALKDB.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/mindthegraph.com\/blog\/et\/success-case-xtalkdb-a-database-of-signaling-pathway-crosstalk\/\" \/>\n<meta property=\"og:locale\" content=\"et_EE\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"XTALKDB: a database of signaling pathway crosstalk Paper Review - 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